PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g11160.1
Common NameLR48_Vigan09g138800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 275aa    MW: 30576.1 Da    PI: 6.4027
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g11160.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP268.11.7e-21126175255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +++GVr+++ +grW AeIrdp++   rkr++lg+f+taeeAa+ +++a+ kl+g
  Vang03g11160.1 126 KFRGVRQRP-WGRWTAEIRDPTQ---RKRVWLGTFDTAEEAAAVYDEAAVKLKG 175
                     89*******.**********965...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381232.6E-6921274IPR017392AP2/ERF transcription factor ERF/PTI6
PfamPF008471.5E-13126175IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-22126184IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.9E-31126184IPR001471AP2/ERF domain
CDDcd000182.58E-34126185No hitNo description
PROSITE profilePS5103224.039126183IPR001471AP2/ERF domain
SMARTSM003801.1E-38126189IPR001471AP2/ERF domain
PRINTSPR003671.4E-10127138IPR001471AP2/ERF domain
PRINTSPR003671.4E-10149165IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MSDTNQPFMS LQPTMNLSHP FNPPTSSSNF YTHPPCKPPK NPQPPHKKLL RVILTDHDAT  60
DSESSGDDDG PKSPSKHKKV KREITHITIN FPFIPEPPTI TPSFSTNPTP FTQPEKRPAA  120
PRRRNKFRGV RQRPWGRWTA EIRDPTQRKR VWLGTFDTAE EAAAVYDEAA VKLKGPDAVT  180
NFPVAANGKR ELHVSPPEAA CSGDGFASPT SVLTYCDGDS SPFDGFRYGE VDAFGFDIDA  240
PFSLTDVNMG VLNQRYAKEE FGEFDPDEFL TWPN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-19127187667ATERF1
3gcc_A2e-19127187667ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014518694.10.0PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like
RefseqXP_014518695.10.0PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like
SwissprotO046826e-51PTI6_SOLLC; Pathogenesis-related genes transcriptional activator PTI6
TrEMBLA0A0L9VDI00.0A0A0L9VDI0_PHAAN; Uncharacterized protein
TrEMBLA0A0S3S5U50.0A0A0S3S5U5_PHAAN; Uncharacterized protein
STRINGGLYMA11G31401.11e-119(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55853252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.12e-23cytokinin response factor 4
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]